bcbio-nextgen

Validated, scalable, community developed variant calling and RNA-seq analysis. You write a high level configuration file specifying your inputs and analysis parameters. This input drives a parallel run that handles distributed execution, idempotent processing restarts and safe transactional steps. bcbio-nextgen provides a shared community resource that handles the data processing component of sequencing analysis, providing researchers with more time to focus on the downstream biology.

Ruffus | google code

Sumatra | Andrew Davison

Sumatra for linux v.0.3.0

MIT Star

StarCluster (MIT)

StarCluster is an open source cluster-computing toolkit for Amazon’s Elastic Compute Cloud (EC2) released under the LGPL license.

StarCluster has been designed to automate and simplify the process of building, configuring, and managing clusters of virtual machines on Amazon’s EC2 cloud. StarCluster allows anyone to easily create a cluster computing environment in the cloud suited for distributed and parallel computing applications and systems.

Amazon EC2

AWS使用小记之EC2(Elastic Compute Cloud)

DRMAA Python |

drmaa 0.7.6

YAML 1.2

YAML 语言介绍

标记语言YAML入门

TCGA

Detailed tutorials of documentation for Omics Pipe

Omics Pipe

Table Of Contents

Omics Pipe